Some other useful commands:

tail : like cat, but only reads the end of the file
tail /var/log/messages : see the last 20 (by default) lines of /var/log/messages
tail -f /var/log/messages : watch the file continuously, while it's being updated
tail -200 /var/log/messages : print the last 200 lines of the file to the screen

more : like cat, but opens the file one screen at a time rather than all at once
more /etc/userdomains : browse through the userdomains file. hit Spaceto go to the next page, q to quit

pico : friendly, easy to use file editor
pico /home/burst/public_html/index.html : edit the index page for the user's website.

last : shows who logged in and when
last -20 : shows only the last 20 logins
last -20 -a : shows last 20 logins, with the hostname in the last field

w : shows who is currently logged in and where they are logged in from.
who : This also shows who is on the server in an shell.

netstat : shows all current network connections.
netstat -an : shows all connections to the server, the source and destination ips and ports.
netstat -rn : shows routing table for all ips bound to the server.

ps: ps is short for process status, which is similar to the top command. It's used to show currently running processes and their PID.
A process ID is a unique number that identifies a process, with that you can kill or terminate a running program on your server (see kill command).
ps U username : shows processes for a certain user
ps aux : shows all system processes
ps aux --forest : shows all system processes like the above but organizes in a hierarchy that's very useful!

du : shows disk usage.
du -sh : shows a summary, in human-readble form, of total disk space used in the current directory, including subdirectories.
du -sh * : same thing, but for each file and directory. helpful when finding large files taking up space.

wc : word count
wc -l filename.txt : tells how many lines are in filename.txt

Firewall - iptables commands
iptables -I INPUT -s IPADDRESSHERE -j DROP : This command stops any connections from the IP address
iptables -L : List all rules in iptables
iptables -F : Flushes all iptables rules (clears the firewall)
iptables --save : Saves the currenty ruleset in memory to disk
service iptables restart : Restarts iptables