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The version of phpmyadmin wouldn't be an issue as it's core function is just to serve as a ui for mysql databases. Most upgrades to phpmyadmin are just bug fixes or improvements to the interface.
What you would ultimately need to make sure of is that the mysql server on your localhost is within the same version of mysql on the server. Also, make sure that you do not have any CREATE DATABASE or USE lines in the sql file. You would create the database under cpanel> mysql databases and the database you select in phpmyadmin will automatically be the database that the sql data is imported to.
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